
Boutique hotel holiday rentals in Shinjuku City
Find and book unique boutique hotel rentals on Airbnb
Top-Rated Boutique Hotels in Shinjuku City
Guests agree: These boutique hotel rentals are highly rated for location, cleanliness and more.
Holiday rentals for every style
Get the amount of space that is right for you
Popular amenities for Shinjuku City Boutique Hotels
Family-Friendly Boutique Hotels

4 single beds in Tokyo/2 train stations: Studio B
We had a great time staying at Arcsens. The staff was super friendly, welcoming and communicated in English perfectly. The rooms have a great design and are exactly as expected from the listing. It's a walkable distance from the metro and JR station and therefore an easy base to explore Tokyo. Thanks so much to the lovely staff for making us feel right at home. Kind regards, Thomas

【Ginza/Tokyo area】 Junior Suite (Free Wi-Fi)
We loved our stay at Hotel Vintage, staff was incredibly helpful and nice :), would go back for sure!

4 single beds in Tokyo/2 train stations : Studio A
Great spot for a group of four friends. Convenient location next to the Oedu line and walking distance from museums, Nakamoto-dori street, and more. Not much space for hanging out in the room, but if you’re spending your days doing activities around Tokyo it’s perfect.

Direct to Shinjuku, Shibuya, 2 min to Subway 201
Lei was an amazing host and was extremely responsive with suggestions and issues we may have faced. Super convenient location and we had a great time in Japan!! 10/10
Boutique Hotels with a patio

Skytree Station 5Airport Disney Direct Kitchen Washing Machine Wifi Elevator Amin Hotel
Comfortable beds. Central home. With elevator which is rare in Tokyo. The hosts are charming and very accommodating which is a plus to this accommodation. Recommended if staying in Tokyo.

TheMillennialsShibuya/Smart Pod Girls Only/1 Guest
This was probably the most comfortable bed I've laid in... this capsule stay was amazing and I wish I was able to have stayed for more than just one night. The amenities were great. I would definitely stay here again!

100-inch projection screen Skytree station 5 airport direct access to kitchen washing machine wifi
Kelly’s place came with many amenities and was within walling distance of the subway station and many other sights. I would definitely comeback again.

Izakaya Amin Hotel
Kelly was a great host, gave us detailed information for the arival and responded very quickly overall. Would recommend!
Quick stats about boutique hotel rentals in Shinjuku City
Total rentals
50 properties
Nightly prices starting at
$80 AUD before taxes and fees
Total number of reviews
4.3K reviews
Rentals with dedicated workspaces
10 properties have a dedicated workspace
Wi-Fi availability
50 properties include access to Wi-Fi
Popular amenities
Kitchen, Wi-Fi and Pool
Destinations to explore
- Serviced apartment rentals Shinjuku City
- Rentals with a patio Shinjuku City
- Rentals with a fireplace Shinjuku City
- Apartment rentals Shinjuku City
- Waterfront rentals Shinjuku City
- Rentals with a washing machine and dryer Shinjuku City
- Smoking-friendly rentals Shinjuku City
- House rentals Shinjuku City
- Kid-friendly rentals Shinjuku City
- Hostel rentals Shinjuku City
- Rentals with outdoor seating Shinjuku City
- Rentals with breakfast Shinjuku City
- Aparthotel rentals Shinjuku City
- Condo rentals Shinjuku City
- Rentals with a hot tub Shinjuku City
- Rentals with a home theatre Shinjuku City
- Pet-friendly rentals Shinjuku City
- Fitness-friendly rentals Shinjuku City
- Loft rentals Shinjuku City
- Hotel rentals Shinjuku City
- Villa rentals Shinjuku City
- Family-friendly rentals Shinjuku City
- Boutique hotel rentals Tokyo Region
- Boutique hotel rentals Japan
- Yurt Rentals United States
- Yurt Rentals United Kingdom
- Castle Rentals United States
- Houseboats United States
- Holiday Caravans United Kingdom
- Private Island Rentals United States
- Farm Houses United States
- Farm Cottages United Kingdom
- Cabin Rentals Australia
- Luxury Cabins United Kingdom
- Luxury Cabins United States
- Holiday Chalets United Kingdom
- Cottage Rentals United States
- Holiday Cottages United Kingdom
- Mansion Rentals United States
- Villa Rentals United Kingdom
- Holiday Bungalows United Kingdom
- Bungalow Rentals United States
- Condo Rentals United States
- Holiday Apartments Australia
- Holiday Houses United States
- Holiday Houses United Kingdom
- Private Holiday Rentals United Kingdom
- Big House Rentals United States
- Big Cottages Australia
- Large Villas United Kingdom
- House Rentals with a Pool United States
- Cabin Rentals with a Pool United States
- Villas with a Pool United Kingdom
- Apartments with a Hot Tub United States
- Holiday Cottages with a Hot Tub United Kingdom
- Beach Cabins United States
- Beach Condos United States
- Beachfront Rentals United States
- Beach Houses United Kingdom
- Beach Villas United Kingdom
- Coastal Cottages United Kingdom
- Pet-Friendly Vacation Rentals United States
- Pet-Friendly Beach Rentals United States
- Pet-Friendly Cabin Rentals United States
- Dog-Friendly Cottages United Kingdom
- Luxury Dog-Friendly Cottages United Kingdom
- Senso-ji Temple
- Tokyo Skytree
- Shinjuku Gyoen National Garden
- Tokyo Disneyland
- Sumida Park
- Tokyo Tower
- Tokyo Dome
- Tokyo Disney Resort
- Tokyo DisneySea
- Ueno Park
- Yoyogi Park
- Meiji Jingu Homotsuden
- Imperial Palace
- Sanrio Puroland
- Yomiuri Land
- Kamogawa Sea World
- Mother Farm
- Kōtoku-in
- Tokyo National Museum
- Southern Beach Chigasaki
- Yokohama Hakkeijima Sea Paradise
- Moriya Beach
- Yamashita Park
- Ōwakudani
- Things to do Shinjuku City
- Tours Shinjuku City
- Art and culture Shinjuku City
- Sightseeing Shinjuku City
- Entertainment Shinjuku City
- Food and drink Shinjuku City
- Things to do Tokyo Region
- Sports activities Tokyo Region
- Sightseeing Tokyo Region
- Food and drink Tokyo Region
- Wellness Tokyo Region
- Tours Tokyo Region
- Nature and outdoors Tokyo Region
- Entertainment Tokyo Region
- Art and culture Tokyo Region
- Things to do Japan
- Food and drink Japan
- Sports activities Japan
- Nature and outdoors Japan
- Entertainment Japan
- Wellness Japan
- Tours Japan
- Art and culture Japan
- Sightseeing Japan