Boutique hotel holiday rentals in Shinjuku City

Find and book unique boutique hotel rentals on Airbnb

Top-Rated Boutique Hotels in Shinjuku City

Guests agree: These boutique hotel rentals are highly rated for location, cleanliness and more.

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Guest favourite

Hotel room in Toshima City

4.98 out of 5 average rating, 166 reviews

" Shishi No Ma " at Sunpika「獅子の間」2022年オープンの小さなアート宿

SophiaRating, 5 stars3 weeks ago

Sunpika made our trip easy and enjoyable. They were communicative and friendly, and the price was good for a charming area of Tokyo that is both convenient and peaceful.

Guest favourite

Hotel room in Toshima City

4.97 out of 5 average rating, 229 reviews

④ Newly built in 2020/Queen bed/Modern bathroom/Rain shower Sunshine City 3 minutes

JacRating, 5 stars1 month ago

It was our first time in Japan and we loved our stay. If you are looking for peaceful and quiet place, this is the deal. Altho most of the shops are closed during the Holidays, the area is close to Sunshine City where shops are mostly open. Yuko&Nick is very responsive and helpful.

Guest favourite

Hotel room in Minato City

5 out of 5 average rating, 15 reviews

New! Central Tokyo Lux Suite | 3min to Sta | 8pax

KennyRating, 5 stars2 days ago

4 friends and I stayed here for 3 nights. Most of our time was spent outside the Airbnb, but the space was comfortable to come back to at night. The beds were comfortable, and the hot water was great considering 5 people were showering each day. There was food and bars within walking distance. I would stay here again if I came back to Tokyo.

Superhost

Hotel room in Asakusa

4.86 out of 5 average rating, 904 reviews

New Open!2BR 1 + Bar Kitchen!Family Room for 4-5!Asakusa Temple view!Balcony Skytree Night View!Direct access to Haneda & Narita Airport!

姿方Rating, 5 stars2 weeks ago

Other than being a little far from Asakusa Station, the rest is perfect!No more disadvantages!But the distance to walk slowly asakusa area is also a treat!

Superhost

Hotel room in Shimokitazawa

4.94 out of 5 average rating, 143 reviews

illi Sun Shimokitazawa 301 | 1 min from station

CornelRating, 5 stars3 months ago

As a family of 4, with kids under 13, we found this house to be perfect. Such an excellent design, amazing location and everything we needed at our stay in Shimokitazawa. What a cute place that we will definitely go back to.

Superhost

Hotel room in Shibuya City

4.81 out of 5 average rating, 124 reviews

TheMillennialsShibuya/Mixed Smart Pod/1 Guest

Noreen MayRating, 5 stars1 month ago

I love the place and how they run it. If you just want to explore tokyo and be there for a couple of days, I recommend this. It is cheap compared to staying in hotels and it is in the heart of Shibuya. It is so convenient there is a convenient store infront of the hotel, there are some good restaurants beside it. I love how peaceful and I felt safe at the hotel. The bathrooms were so clean and you can do your laundry. I stayed on 6th floor which was I see mostly males but I did not feel unsafe at all. Everyone was respectful and tries to be quiet so as to not disturb others. The front desk guy is also very friendly and was able to work with my check out time as I had to go at 4AM so he put a little box for me to drop the keys. They also offer pajamas which I avail, and free stuff you can get if you need such as toothbrush, hairties, mouthwash, etc. The towels and slippers were already provided and is on top of your bed. Overall I love it and I will stay here again on my next Japan trip

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Popular amenities for Shinjuku City Boutique Hotels

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Pool

Free parking on premises

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Family-Friendly Boutique Hotels

Superhost

Hotel room in Ryōkoku

4.84 out of 5 average rating, 682 reviews

4 single beds in Tokyo/2 train stations: Studio B

MichaelRating, 5 stars1 week ago

Had a amazing stay especially if you look explore the right side of tokyo like asakusa and akihabara

Superhost

Hotel room in 中央区

4.78 out of 5 average rating, 830 reviews

【Ginza/Tokyo area】 Junior Suite (Free Wi-Fi)

MairiRating, 5 stars2 months ago

Very clean and comfortable. Easy to get to and very quiet.

Superhost

Hotel room in Ryōkoku

4.9 out of 5 average rating, 111 reviews

4 single beds in Tokyo/2 train stations : Studio A

MarkRating, 5 stars3 months ago

We had a nice stay and would recommend to anyone wanting to say in the Neighborhood.

Hotel room in Koto City

4.38 out of 5 average rating, 50 reviews

Direct to Shinjuku, Shibuya, 2 min to Subway 201

OrionRating, 5 stars14 months ago

Lei was an amazing host and was extremely responsive with suggestions and issues we may have faced. Super convenient location and we had a great time in Japan!! 10/10

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Boutique Hotels with a patio

Hotel room in Sumida City

4.67 out of 5 average rating, 9 reviews

Skytree Station 5Airport Disney Direct Kitchen Washing Machine Wifi Elevator Amin Hotel

BenoitRating, 5 stars21 months ago

Comfortable beds. Central home. With elevator which is rare in Tokyo. The hosts are charming and very accommodating which is a plus to this accommodation. Recommended if staying in Tokyo.

Superhost

Hotel room in Shibuya City

4.63 out of 5 average rating, 8 reviews

TheMillennialsShibuya/Smart Pod Girls Only/1 Guest

MicaelaRating, 5 stars8 months ago

This was probably the most comfortable bed I've laid in... this capsule stay was amazing and I wish I was able to have stayed for more than just one night. The amenities were great. I would definitely stay here again!

Hotel room in Sumida City

4.77 out of 5 average rating, 13 reviews

100-inch projection screen Skytree station 5 airport direct access to kitchen washing machine wifi

RoryRating, 5 stars2 months ago

Kelly’s place came with many amenities and was within walling distance of the subway station and many other sights. I would definitely comeback again.